Publications

Harnessing GPU Acceleration for Exact DNA Sequence Matching via the KMP Algorithm

A Novel Methodology for a Comprehensive Analysis of Genomic Sequence-to-Graph Alignment Tools

On the optimization of GWFA algorithm: enabling real-case applications supporting alignment backtracking

TSUNAMI: A GPU Implementation of the WFA Algorithm

On the Genome Sequence Alignment FPGA Acceleration via KSW2z

Fast Genome Analysis Leveraging Exact String Matching

Surfing the Wavefront of Genome Alignment

The Importance of Being X-Drop: High Performance Genome Alignment on Reconfigurable Hardware

LOGAN: High-Performance GPU-Based X-Drop Long-Read Alignment