Articles

Publications

Publication

On the optimization of copy number variations representation in pangenome graphs

Read

Abstract molecular structure, cover of the publication on optimizing copy number variation representation in pangenome graphs

Publication

Harnessing GPU Acceleration for Exact DNA Sequence Matching via the KMP Algorithm

Read

Computer screen displaying lines of code, cover of the publication on GPU-accelerated exact DNA sequence matching via the KMP algorithm

Publication

A Novel Methodology for a Comprehensive Analysis of Genomic Sequence-to-Graph Alignment Tools

Read

Glass beaker on printed data tables, cover of the publication on a methodology for analyzing sequence-to-graph alignment tools

Publication

On the optimization of GWFA algorithm: enabling real-case applications supporting alignment backtracking

Read

Abstract blue and green light streaks, cover of the publication on optimizing the GWFA algorithm for alignment backtracking

Publication

TSUNAMI: A GPU Implementation of the WFA Algorithm

Read

Close-up of computer hardware with cooling fans, cover of the publication on TSUNAMI, a GPU implementation of the WFA algorithm

Publication

On the Genome Sequence Alignment FPGA Acceleration via KSW2z

Read

DNA double helix with a hexagonal pattern, cover of the publication on FPGA acceleration of genome sequence alignment via KSW2z

Publication

Fast Genome Analysis Leveraging Exact String Matching

Read

Abstract blue and white light lines, cover of the publication on fast genome analysis leveraging exact string matching

Publication

Surfing the Wavefront of Genome Alignment

Read

Laboratory glass beaker with test tubes, cover of the publication on wavefront-based genome alignment

Publication

The Importance of Being X-Drop: High Performance Genome Alignment on Reconfigurable Hardware

Read

Colorful geometric triangle pattern, cover of the publication on X-Drop genome alignment on reconfigurable hardware

Publication

LOGAN: High-Performance GPU-Based X-Drop Long-Read Alignment

Read

Abstract digital pattern, cover of the publication on LOGAN, GPU-based sequence alignment

Publication

An FPGA-Based Computing Infrastructure Tailored to Efficiently Scaffold Genome Sequences

Read

Close-up of a computer, cover of the publication on an FPGA-based computing infrastructure for genomics